Scripps Genome ADVISER | Annotation and Distributed Variant Interpretation Server

Errors Description



1. Number of fields in some columns - verify that each line has 5 columns, tab separated with the chromosome column (2) is in the format "chrX". If the 5th column contains no data, substitute a dash or a period as a place holder.

2. Invalid chromosome identifiers - ensure the chromosomes are formatted as 'chrX' only regular chromosomes 1-22,X,Y are accepted.

3. Unknown variant type - only use valid variant types: gain or loss; remove invalid lines from input file;

4. Illegal starting coordinate - verify all starting coordinates are integers, also the start <= end; verify source data; remove invalid lines from input file.

5. Illegal ending coordinate - verify all starting coordinates are integers, also the start <= end; verify source data; remove invalid lines from input file.




Scripps Genome ADVISER | Annotation and Distributed Variant Interpretation Server